Virtual Screening Using AutoDock 4 for Virtual Screening This teaches you not only how to use AutoDock 4 to perform virtual screening using AutoDock 4, but also a lot about using UNIX to organize and process large numbers of files, skills that are transferable to many other problems. It describes how to use Chimera, AutoDockTools and AutoDock 4.0.1 to study Histone Deacetylase (HDAC) Inhibitors. VI European Workshop on Drug Design - Molecular Docking Tutorial This is a tutorial given in the VI European Workshop in Drug Design, in Certosa di Pontignano (Siena, Italy) and was prepared by Rino Ragno (RCMD), Anna Tramontano (BIOCOMPUTING), Adriano Marinelli (MMVSL) and Tiziano Tuccinardi (MMVSL).

Flexible rings docking A step-by-step guide on how to dock flexible cyclic molecules with AutoDock 4.2 Using AutoDock 3.0.5 with AutoDockTools This tutorial teaches you how to use AutoDockTools 3.0.5 to set up AutoGrid grid map calculations, how to set up AutoDock dockings, and how to analyse your docking results. AutoDock Vina Video Tutorial This video tutorial demonstrates molecular docking of imatinib using Vina with AutoDock Tools and PyMOL Using AutoLigand with AutoDockTools AutoLigand identifies and characterizes ligand binding sites in a macromolecule, using the grid-based energy evaluation method in AutoGrid. User Ligand-Protein Docking Using AutoDock 4 with AutoDockTools This tutorial teaches you how to use AutoDockTools to set up AutoGrid 4 grid map calculations, how to set up AutoDock 4 dockings, and how to analyse your docking results.

Schrodinger software tutorial